I too have seen this issue with FD/FUD. In fact, I had two prints of the same part in the same order- one straight, the other bent as shown with the original post.
The problem? The bent part was set on end in the printer, while the straight part was laying flat. Simple if you think about a stack of pancakes... a tall stack of small pancakes is unstable, while a short stack of wide pancakes sets quite well.
I'm sure it's also affected by heat during build. If I understand correctly, FD/FUD material is heated when sprayed out, so there must be issues as it cools on the bed plate.
But regarding the print orientation-- we have no control over how Shapeways orients parts, and the only recourse is to complain and get a reprint. Bad for creators, even worse for our unwitting customers who have no idea of the process randomness they're being subjected to.